Which emulators are allowed to runs this game? I have snes9x for FF4 runs and I was wondering if I could use that to run this game as well. Also will the files for the Pazuzu save and end game save for the resistance glitch work for snes9x as well as Bizhawk?

If you ran FF4 I assume you did get a version of Snes9x that is allowed. (generally 1.5x or higher).

The savefiles provided should also work in Snes9x but you may need to rename the files accordingly

Alright awesome. Now I have another issue. I got the game working on Snes9x (It's 1.60) then went and downloaded the savefiles from the resources section. I can't extract the files from the zipped folder or even look at what's inside. Is there something wrong with the download or am I doing something wrong?

Speedrun.com treats uploaded files stupidly. They're not a zip folder, which is why eLmaGus was saying you'll need to re-name the extensions. The instructions are listed on the resource page for the saves.