The Wise Men: -Being in the fruit shooting animation delays falling into a pit, but it doesn't seem that you can jump out of it after the animation finishes. You are, however, able to walk on the bottom of the screen for the short time that the animation plays.

-Certain stairs (like the green ones in level 4 of normal mode) can allow you to clip downward into the ground if you walk into the stairs and jump. When clipped into the ground, the collision seems generally the same as the ground would normally be, so I haven't found a use for this.

-Being in contact with sloped ceilings counts as being on the ground, so it's possible to jump again while in contact with them.

-There's an area on the far right of level 11 on normal where the wall isn't solid and you can jump through it. If you land on the seam of the wall, you can climb up higher, but I haven't found a way to get back out of the wall.

-Same deal on level 12 of normal.

Flight to Egypt: -You can clip through steep slopes (or maybe any slope? I don't quite know) if you jump just right or damage boost with an enemy. http://www.twitch.tv/linkums/c/7010748

-You can jump to the next level upward in certain areas. Not really a glitch though, I don't think.

-If you keep your damage boost speed long enough, you can outrun the camera and cause a screen/level wrap. Slopes still seem to exist where they would normally (you can tell by the donkey's animation), but since enemy spawns are based on camera location, they often spawn out of harm's way.

Jesus and the Temple: -Collecting the first scroll sometimes glitches out the level graphics and objects. See:

-Jumping on the last level on Normal is stupid.

I just figured out that you can shoot fruit at the troll pushing pillars to make them go in the other direction. If you stand on one and do it just right, you can ride it back in the other direction. I've done it once in realtime, but it's extremely difficult.

You can do it in the next level too, and this more efficient way is probably possible instead of what I did in the previous video:

Found a weird new invincibility thing where jumping off of the edge of a certain platform without moving on the platform otherwise makes it so you don't get hit by the next enemy. http://www.twitch.tv/linkums/c/7057763

A couple more...

In The Wise Men, you can prolong the start boost on the first level by spitting repeatedly before it runs out. The start boost only occurs on a cold boot of the game.

In Jesus and the Temple, if you take damage as you're crossing the kill plane of a pit, the camera will scroll to the top and you can move left or right at the speed you were moving at when you entered the glitch. This only seems to be possible on the last level.

MikansBox found a glitch in Flight to Egypt. On levels that you can get down to the death plane at the bottom, you can mash B and repeatedly kick to stop from dying and continue along the bottom. It doesn't seem possible to finish the level like this, unfortunately. I didn't try to hard though, so it could be a case of the end level trigger not working if you're in an attack animation like in The Wise Men, or it could just be that the end level trigger is actually on the ground like you'd expect.